Basic Information
VIS ID
TVIS10019872
Fusion event
HBV-chr6 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1791
Integrated sequence
CCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCA| |TAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGT
Host Sequence
Chromosome
chr6
Cytoband
q12
Reference genome
GRCh37.55
Start
67781579/67071686 (Hg38)
End
67781579/67071686 (Hg38)
Nearest miRNA
hsa-mir-10398/Upstream/9681474; hsa-mir-10524/Downstream/4305274;
Nearest TSS
ENST00000381078/Upstream/1364461; ENST00000449928/Downstream/817653;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/976748, chr6-CpG: 37/Downstream/1563154
Nearby gene
LOC102723883
Upstream sequence
TATAACATGAATCAAATGCGAGAACCAGGTTTTAAACACTTAGAATCTCAAATGACATgggaacatgatatagaaaaaagaacacgtgctctaaaatcag
Downstream sequence
TGTACAACAATCTAGTATGGAAGTAAAGAAAGTTAATTTTAAAACAACAACACCACTTTATTGGTATAGGTTTATTTTCTTCCCTCTCCTTAGTGCTATT
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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