VISDB Viral Integration Site DataBase

VIS ID

TVIS10019876

Fusion event

HBV-ARID5B integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HBV

Reference genome

Start

1820

Integrated sequence

TTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCA| |ACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTAT

Chromosome

chr10

Cytoband

q21.2

Reference genome

Start

End

63700693/61940934 (Hg38)

Location type

Intron3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-128-3p ; hsa-mir-101-3p ; hsa-mir-22-3p ; hsa-mir-196a-5p ; hsa-mir-196b-5p ; hsa-mir-1277-5p ; hsa-mir-3653-3p ; hsa-mir-3658 ; hsa-mir-5011-5p ; hsa-mir-186-3p ; hsa-mir-320a ; hsa-mir-373-5p ; hsa-mir-576-3p ; hsa-mir-616-5p ; hsa-mir-767-3p ; hsa-mir-320b ; hsa-mir-320c ; hsa-mir-320d ; hsa-mir-4426 ; hsa-mir-4429 ; hsa-mir-4491 ; hsa-mir-4647 ; hsa-mir-4657 ; hsa-mir-4662b ; hsa-mir-371b-5p ; hsa-mir-6833-5p ; hsa-mir-570-5p ; hsa-mir-3692-3p ; hsa-mir-548ag ; hsa-mir-548ai ; hsa-mir-4476 ; hsa-mir-4694-3p ; hsa-mir-5692a ; hsa-mir-6876-5p ; hsa-mir-548ba ; hsa-mir-33a-5p ; hsa-mir-185-5p ; hsa-mir-432-5p ; hsa-mir-33b-5p ; hsa-mir-1284 ; hsa-mir-4306 ; hsa-mir-4644 ; hsa-mir-5192 ; hsa-mir-6813-3p ; hsa-mir-583 ; hsa-mir-573 ; hsa-mir-3156-5p ; hsa-mir-3616-5p ; hsa-mir-4670-3p ; hsa-mir-190a-3p ; hsa-mir-656-3p ; hsa-mir-4795-3p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-3190-3p ; hsa-mir-7856-5p ; hsa-mir-552-3p ; hsa-mir-127-5p ; hsa-mir-7843-3p ; hsa-mir-140-3p ; hsa-mir-4482-3p ; hsa-mir-152-5p ; hsa-mir-597-3p ; hsa-mir-182-3p ; hsa-mir-4680-5p ; hsa-mir-126-5p ; hsa-mir-218-2-3p ; hsa-mir-3928-3p ; hsa-mir-620 ; hsa-mir-1270 ; hsa-mir-4531 ; hsa-mir-324-5p ; hsa-mir-423-5p ; hsa-mir-3184-5p ; hsa-mir-6866-3p ; hsa-mir-188-5p ; hsa-mir-6743-5p ; hsa-mir-4688

Nearest miRNA

hsa-mir-1265/Upstream/4636375; hsa-mir-107/Downstream/1432023;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/37394, chr10-CpG: 67/Downstream/327348

Upstream sequence

cagggtcagggttaggggttagggtcggggtcggggtcggggtcggggtcagggtcagggtcagggtgagggtgagggtgagggtgagggtcagggtgag

Downstream sequence

ataagcagagcttgggagagataacgagttaaaagcagtaatttatgcggaaaaATACATGCCAATTCAAGATGTGCCTGGTTGCCAAGGAAAAGTCTTA