ABCC9 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019878
Fusion event
HBV-ABCC9 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1791
Integrated sequence
CCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCA| |TAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGT
Host Sequence
Chromosome
chr12
Cytoband
p12.1
Reference genome
GRCh37.55
Start
22023827/21870893 (Hg38)
End
22023827/21870893 (Hg38)
Location type
Intron22
Target gene
ABCC9
miRNAs that regulate target gene
hsa-mir-142-3p ; hsa-mir-4668-5p ; hsa-mir-514b-3p ; hsa-mir-514a-3p ; hsa-mir-3978 ; hsa-mir-6124 ; hsa-mir-3148 ; hsa-mir-890 ; hsa-mir-4511 ; hsa-mir-3133
Nearest miRNA
hsa-mir-1244-3/Upstream/4197499; hsa-let-7i/Downstream/2341528;
Nearest TSS
ENST00000382841/Upstream/43683; ENST00000538498/Downstream/40085;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/95836, chr12-CpG: 90/Downstream/70127
Upstream sequence
AGTGGTATTATAAAAATAAAACGTTAATTACTTCCGtataattgttttaaattttctttaaatataaatatcttaaaataCCTGAATAAAACCATGATAT
Downstream sequence
AAAGAGATGCCATGTTATAAAAACTGTCTCAACTTCAGGCCCTTTTCCCTAAAAATATTCTTGCACCATATCTATCTTTATCTTCTTTTTCTTTTTTGCA
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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