Basic Information
VIS ID
TVIS10019879
Fusion event
HBV-chr12 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1804
Integrated sequence
ATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGC| |GCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCAT
Host Sequence
Chromosome
chr12
Cytoband
q14.1
Reference genome
GRCh37.55
Start
58648671/58254888 (Hg38)
End
58648671/58254888 (Hg38)
Nearest miRNA
hsa-mir-1228/Upstream/430196; hsa-let-7i/Downstream/4005471;
Nearest TSS
ENST00000382841/Upstream/166996; ENST00000548969/Downstream/289236;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/318667, chr12-CpG: 100/Downstream/664890
Nearby gene
LINC02403
Upstream sequence
aatataggcatcagaataagaatcatatattaactagggattctgcaatttggacagtgtttagctgagagattcccctaatggtctctcctgtggtcag
Downstream sequence
AGAGAAGGAATATTAATCATTTGAATCATTGTATAATTCCAGTTGCAGTAAAATTTACTCCCAGGACATCTTGTTTCATGGTGAGAATTCTTTAGCCTCA
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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