Basic Information
VIS ID
TVIS10019880
Fusion event
HBV-chr12 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1807
Integrated sequence
CTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCA| |CCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGA
Host Sequence
Chromosome
chr12
Cytoband
q14.1
Reference genome
GRCh37.55
Start
61097370/60703589 (Hg38)
End
61097370/60703589 (Hg38)
Nearest miRNA
hsa-mir-1228/Upstream/2878897; hsa-let-7i/Downstream/1556770;
Nearest TSS
ENST00000382841/Upstream/610725; ENST00000546718/Downstream/1123644;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/1106863, chr12-CpG: 117/Downstream/1487398
Nearby gene
TAFA2
Upstream sequence
tgaaaatggctggttcctgccttaactgatgacattccaccattgtgatttgttcctgccccaccttaactgagtgattaaccttgtgaaattcctttcc
Downstream sequence
tggctcagaagctcccccactgagcaccttgtgacccccgcccctgcccataagagagcaaacccctttgactgtaattgtccactacccacccaaatcc
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate