Basic Information
VIS ID
TVIS10019881
Fusion event
HBV-chr13 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1576
Integrated sequence
TGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGA| |CCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCT
Host Sequence
Chromosome
chr13
Cytoband
q21.31
Reference genome
GRCh37.55
Start
62570838/61996705 (Hg38)
End
62570838/61996705 (Hg38)
Fragile sites / regions
FRA13B
Nearest miRNA
hsa-mir-1297/Upstream/796825; hsa-mir-1267/Downstream/3969625;
Nearest TSS
ENST00000623511/Upstream/568759; ENST00000455977/Downstream/32843;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/1598794, chr13-CpG: 36/Downstream/1814881
Nearby gene
LINC00358
Upstream sequence
TAGAGCTAACTAACTTTTTTATAACTTGAAATTACTTGCTACTGTCCCTCTAGATTAGAGATTGTGTATTTTGGCTTTATAACTTGGATTAGATTAGTGC
Downstream sequence
AAAGGGTTGATTTTGTCTTTCCATGCTTGAGCGTGTGATCACTTCCATAGATTTATTTATTTTTTGTGTGTGGGAGAAGATATTGATTTAAATTTTTATT
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
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