Basic Information
VIS ID
TVIS10019888
Fusion event
HBV-chrX integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29212479
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1643
End
1824
Integrated sequence
CCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTT
Host Sequence
Chromosome
chrX
Cytoband
q21.33
Reference genome
GRCh37.55
Start
97016596/97761598 (Hg38)
End
97016596/97761598 (Hg38)
Nearest miRNA
hsa-let-7f-2/Upstream/2698372; hsa-mir-105-1/Downstream/8878216;
Nearest TSS
ENST00000429181/Upstream/119009; ENST00000627700/Downstream/812261;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/1076231, chrX-CpG: 23/Downstream/2177738
Nearby gene
DIAPH2-AS1
Upstream sequence
gcggtgagtgttacagctcttaaggaggcacatctggagttgttcattcctcccagtgggttcgtgatctcgctggcttcaggagtgaagctgcagacct
Downstream sequence
GGAATTTTCTTTTGTCCAAATGCTGTATAATGTATTCCATCGTATTCCATTTTTCTGAAAATGATCTAATTTACATGATCAAATAGCACTTGATTCTCAT
Reference
Yoo, S., et al. A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis. BMC Med ,2017, 15(1): 214.
Curate