Basic Information
VIS ID
TVIS10019895
Fusion event
HBV-chr1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27064257
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1721
Integrated sequence
GTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTT| |TGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAA
Host Sequence
Chromosome
chr1
Cytoband
q44
Reference genome
GRCh37/hg19
Start
249239699/248945500 (Hg38)
End
249239699/248945500 (Hg38)
Fragile sites / regions
FRA1I
Nearest miRNA
hsa-mir-101-1/Upstream/119057;
Nearest TSS
ENST00000473358/Upstream/39128;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/38709, None/Downstream
Nearby gene
PGBD2
Upstream sequence
ctcacagtataaaaaaagctgcagggaagttcaaactgggcgaagcacaccaaagtgccacaaagccaatgtagccagactgcctctctagattcctcct
Downstream sequence
ctctgggcagaccatgtctgaaagagaggcagcagccccagtcagggtcttatagataaaactcccatatccctgggacagagcacctgagggaaatggt
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate