Basic Information
VIS ID
TVIS10019900
Fusion event
HBV-chr4 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27064257
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1688
Integrated sequence
CGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAA| |CGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAG
Host Sequence
Chromosome
chr4
Cytoband
q33
Reference genome
GRCh37/hg19
Start
171843759/170922608 (Hg38)
End
171843759/170922608 (Hg38)
Nearest miRNA
hsa-mir-12113/Upstream/5536271; hsa-mir-1305/Downstream/263576;
Nearest TSS
ENST00000502981/Upstream/178890; ENST00000505329/Downstream/117994;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/832256, chr4-CpG: 117/Downstream/889975
Nearby gene
LINC02431
Upstream sequence
CATGACTTCTTTTTTTCAGGCTATTAGTTCGTTACACCAAGAAAGTACCCCAAGTGTCAACTCCAACTCTTGTAGAGGTCTCAAGAAACCTAGGAAAAGT
Downstream sequence
TCCTGCAATGTATCTATGCAAGATGCATTTTTAAAATGGAAAAGATAATAAAATGATTAAAACTCAATTGTTAGACATCTCTCTGAGAAAATGTTAATAA
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate