Basic Information
VIS ID
TVIS10019902
Fusion event
HBV-chr13 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27064257
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1731
Integrated sequence
ACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGA| |CTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACC
Host Sequence
Chromosome
chr13
Cytoband
q33.1
Reference genome
GRCh37/hg19
Start
103811044/103158694 (Hg38)
End
103811044/103158694 (Hg38)
Nearest miRNA
hsa-mir-1297/Upstream/1112690; hsa-mir-1267/Downstream/4372477;
Nearest TSS
ENST00000623511/Upstream/91848; ENST00000444795/Downstream/266506;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/312281, chr13-CpG: 29/Downstream/3334366
Nearby gene
SLC10A2
Upstream sequence
aggaactttccaggactttactactacccaaataacttttttctctttttgattgtttctttcaatataaattccctaatcatatcaacctcaccaataa
Downstream sequence
CATTATTTCACAATAAAGGGAAAGGAAACAAAATCTACCATTCTCAGCTTCTAGTTTTCACTTTTCAGCACTGTGATATTACAAACCTTGATTTTCTTCT
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate