Fusion event
HBV-CDK15 integration
Detection method
VirusFinder
Disease
Hepatocellular carcinoma (HCC)
Integrated sequence
ACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATC| |AAGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTATGTA
End
202755505/201890782 (Hg38)
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-10b/Upstream/12757670; hsa-mir-1244-1/Downstream/4892452;
Upstream sequence
ACGTGCACCTCATCATGTGACCCATGTCATGCTGCTTATCCCACTGATCTCCAATGCGGTACATGACCCCTTCATTGGTTGTGCAGATTTCCTCGTGGGC
Downstream sequence
AGAGGAGTCTTTGTTTACAGTTTCAGGAGTGAGGCTAAAGCCAGAAATGTGTGACCTTTTGGCCTCCTACCAGAAAGGTCACCACCCAGCCCAGTTTAGC
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.