CDK15 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019906
Fusion event
HBV-CDK15 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
457
Integrated sequence
ACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATC| |AAGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTATGTA
Host Sequence
Chromosome
chr2
Cytoband
q33.1
Reference genome
End
202755505/201890782 (Hg38)
Location type
Intron12
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-10b/Upstream/12757670; hsa-mir-1244-1/Downstream/4892452;
Upstream sequence
ACGTGCACCTCATCATGTGACCCATGTCATGCTGCTTATCCCACTGATCTCCAATGCGGTACATGACCCCTTCATTGGTTGTGCAGATTTCCTCGTGGGC
Downstream sequence
AGAGGAGTCTTTGTTTACAGTTTCAGGAGTGAGGCTAAAGCCAGAAATGTGTGACCTTTTGGCCTCCTACCAGAAAGGTCACCACCCAGCCCAGTTTAGC
Target sequence
C
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate