Basic Information
VIS ID
TVIS10019908
Fusion event
HBV-chr11 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27064257
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1817
Integrated sequence
TGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCAT| |GCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCT
Host Sequence
Chromosome
chr11
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
122939935/123069227 (Hg38)
End
122939935/123069227 (Hg38)
Nearest miRNA
hsa-let-7a-2/Upstream/916919; hsa-mir-3167/Downstream/312213;
Nearest TSS
ENST00000527297/Upstream/5997; ENST00000531681/Downstream/14509;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/6132, chr11-CpG: 115/Downstream/125491
Nearby gene
CLMP
Upstream sequence
tttatagatttctccaaacattacatttgtttttcttccatttgaaagctcatttgcaatactaactcctgaaacgagacacagctgtttaatgggactg
Downstream sequence
ggctattcccagaaatagaagactggtttacggggatcctttgccactcagctattaactcagttttcccaccaactcagcttttagtgtgtgaaacctc
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
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