Basic Information
VIS ID
TVIS10019909
Fusion event
HBV-LOC105371849 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27064257
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
807
Integrated sequence
AGGGCTTTCCCCCACTGTTTGGCTTTCAGTTATATGGATGATGTGGTATTGGGGGCCAAGTCTGTACAGCATCTTGAGTCCCTTTTTACCGCTGTTACCA| |ATTTTCTTTTGTCTTTGGGTATACATTTAAACCCTAACAAAACAAAGAGATGGGGTTACTCTCTAAATTTTATGGGTTATGTCATTGGATGTTATGGGTC
Host Sequence
Chromosome
chr17
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
58157683/60080322 (Hg38)
End
58157683/60080322 (Hg38)
Location type
Intronic
Target gene
LOC105371849
Nearest miRNA
hsa-mir-10226/Upstream/37217; hsa-mir-1250/Downstream/2863893;
Nearest TSS
ENST00000595228/Upstream/1013; ENST00000585705/Downstream/59759;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/1256, chr17-CpG: 164/Downstream/39191
Nearby gene
WFDC21P
Upstream sequence
cacagccaaccctcaaataatacccatagtgtaggacccttacaacgttacactcccaactcttctccccacccatcttttgtTTTCTTTCTTTCCACAG
Downstream sequence
tatgtgcgttatatatgtgcatgtgtgtgtgtgtattcgtgtAAAGAAATGTATTCAAGCATTTGTTCAGAGAAGATCAGGAGCTGAAACCTAGTCGTTG
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate