Basic Information
VIS ID
TVIS10019911
Fusion event
HBV-LOC105369905 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27064257
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
367
Integrated sequence
TCTCTCAATTTTCTAGGGGGAACTACCGTGTGTCTTGGCCAAAATTCGCAGTCCCCAACCTCCAATCACTCACCAACCTCTTGTCCTCCAACTTGTCCTG| |GTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTT
Host Sequence
Chromosome
chr12
Cytoband
q22
Reference genome
GRCh37/hg19
Start
93019067/92625291 (Hg38)
End
93019067/92625291 (Hg38)
Location type
Intronic
Target gene
LOC105369905
Nearest miRNA
hsa-let-7i/Upstream/5880142; hsa-mir-1178/Downstream/1936498;
Nearest TSS
ENST00000382841/Upstream/158840; ENST00000397833/Downstream/77552;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/478734, chr12-CpG: 133/Downstream/303275
Nearby gene
C12orf74
Upstream sequence
TTTTCTTATCTTTCATAAGAACACAGATGATTCATCCATATTATTCAGTGCTTCCACTTGTTTGTAGGGGTAAAAGAAAGGTTTTTGCATCACTTTAAAT
Downstream sequence
GGCAATTTTATAGAAAGAGGTTTTGTTTTTAGTTTACTATACTAACAATGCTAGATATAAGTGAATTTTAATGGAAAATGGGGAATGTGCTCAAACACAT
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate