Basic Information
VIS ID
TVIS10019913
Fusion event
HBV-chr17 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
2052
Integrated sequence
GTTTTTGCCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCGGGAAGCCTTAGAGTCTCCTGAGCATTGTTCACCT| |CACCATACTGCACTCAGGCAAGCAATTCTTTGCTGGGGGGAACTAATGACTCTAGCTACCTGGGTGGGTGTTAATTTGGAAGATCCAGCGTCTAGAGACC
Host Sequence
Chromosome
chr17
Cytoband
p12
Reference genome
End
14633992/14730675 (Hg38)
Fragile sites / regions
Nearest miRNA
hsa-mir-1253/Upstream/1187029; hsa-mir-10226/Downstream/520952;
Nearby gene
Upstream sequence
aatctcggcccactgcaacctccgcctcctgggttcaagcgattctcctgcctcagcctcctgagtagctcggattacaggcgcgtgccaccacatctgg
Downstream sequence
aggggtatcgcaggaaagtacaagatgagtctgaaatatcatgccaggaagtgaagaggagtttgaagaatcagggacacatatcaaaaggggcaggagc
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate