TEKT3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019914
Fusion event
HBV-TEKT3 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27064257
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1818
Integrated sequence
GTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATG| |CAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTT
Host Sequence
Chromosome
chr17
Cytoband
p12
Reference genome
GRCh37/hg19
Start
15243372/15340055 (Hg38)
End
15243372/15340055 (Hg38)
Location type
Exon8
Fragile sites / regions
FRA17A
Target gene
TEKT3
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-1253/Upstream/88359; hsa-mir-10226/Downstream/941959;
Nearest TSS
ENST00000595228/Upstream/1499; ENST00000584540/Downstream/1538;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/76866, chr17-CpG: 36/Downstream/1333
Upstream sequence
atattggtaagtgagtgataaggcaaatgtcaaacaattgatgaatctgggtgaaaagtacatgggagttcctgtaacttttctgaaattttaaatcatg
Downstream sequence
atgtacctagagaaatgcaaatatgtttacaattagaatgtacaagaattcctttctagtatttttaaagggagcaaactaaaagtccatcaacaggagg
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
Curate