DOK5 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019915
Fusion event
HBV-DOK5 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27064257
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1816
Integrated sequence
CTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCA| |TGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCC
Host Sequence
Chromosome
chr20
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
53170162/54553623 (Hg38)
End
53170162/54553623 (Hg38)
Location type
Intron1
Target gene
DOK5
Nearest miRNA
hsa-mir-103a-2/Upstream/485138; hsa-mir-1-1/Downstream/2767879;
Nearest TSS
ENST00000382410/Upstream/77905; ENST00000484860/Downstream/1310;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/77169, chr20-CpG: 165/Downstream/1449924
Upstream sequence
gctgtctttgcagcttttgagcagattgccagtgacgtgcattgcattctggcttaatatttactcactgataacactgtgttctttcttttctactttt
Downstream sequence
cggtggctcacgtctgtaagcccagcactttgggaggccgaggcgggtggatcatgaggtgaggagtttgagtccagcctgaccaacatggtgaaacccg
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
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