Basic Information
VIS ID
TVIS10019917
Fusion event
HBV-PANTR1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27064257
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1673
Integrated sequence
GGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGAC| |TCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGT
Host Sequence
Chromosome
chr2
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
105457559/104841101 (Hg38)
End
105457559/104841101 (Hg38)
Location type
Intron3
Fragile sites / regions
FRA2S
Target gene
PANTR1
Nearest miRNA
hsa-mir-1285-2/Upstream/2408735; hsa-mir-10b/Downstream/4300389;
Nearest TSS
ENST00000437798/Upstream/83382; ENST00000361360/Downstream/14410;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/181619, chr2-CpG: 210/Downstream/1614
Upstream sequence
TAATTCTATTAGAAAAATGGTGTATGTATTTTTACTTACTAATGCAAAGTTTAACAATTACCACTTCATGTATTAAAAGATACTAACTATGGGGCTTGTT
Downstream sequence
ataaatatgtgtagtatatTACCAAACTGTACTATACTTAAGGAGGAGGAGGAGCTTCCAAGGATTGCCATACAATATTTTAGTTAACTGAGTACTGTTT
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
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