CPA6 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019923
Fusion event
HBV-CPA6 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27064257
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1807
Integrated sequence
CTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCA| |CCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGA
Host Sequence
Chromosome
chr8
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
68545531/67633296 (Hg38)
End
68545531/67633296 (Hg38)
Location type
Intron10
Target gene
CPA6
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-mir-124-1/Upstream/3254039; hsa-mir-10400/Downstream/6915247;
Nearest TSS
ENST00000518652/Upstream/180646; ENST00000526382/Downstream/99291;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/289481, chr8-CpG: 64/Downstream/318894
Upstream sequence
caagggtataaatatgtgagctctctgttctatgtcattgatctatatgtctatccttatgccagtatcacactattctgataaccatagAAAATTAGTA
Downstream sequence
aatacataatatatgtgaatttattcttataatttttattttttgtttgttgtaggttcttattgcccttttcttcctctttcttggattaatcaatttt
Reference
Fujimoto, A., et al. Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer. Nat Genet ,2016,48(5): 500-509.
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