VISDB Viral Integration Site DataBase

VIS ID

TVIS10019926

Fusion event

HBV-CLDN10 integration

Validated

No

Detection method

RNA-Seq

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2013

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr13

Cytoband

q32.1

Reference genome

Start

End

96216853/95564599 (Hg38)

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-331-3p ; hsa-mir-6810-3p ; hsa-mir-6801-3p ; hsa-mir-6729-3p ; hsa-mir-4756-3p ; hsa-mir-3919 ; hsa-mir-3925-5p ; hsa-mir-486-5p

Nearest miRNA

hsa-mir-1297/Upstream/3074064; hsa-mir-1267/Downstream/862630;

Nearest TSS

Nearest CpG islands

None/Target, chr13-CpG: 551/Upstream/11042, chr13-CpG: 89/Downstream/76753

Upstream sequence

ATAGTGTCATCTACAGGTTTGGGGGGAAGAGAAAGAAAAGAATCCTGCCAATACACGAAACATTTGCAGCGGTCTCAGCACAACAGTGAGAAGATATTCA

Downstream sequence

TATGCCGTGTTAATTGGATCTTCTTTGTAGATTTCCAGGACAACTCTACATAAGGCACATCTTGGTTGCCCAAGTTAGGAAAACACAACTAAGCTCATGA

Target sequence

AATTGTTGTCTCAGTGGATAGAGGGAGCCTCCCAGAGGATGGAGCAAGAAAGCTCTCTTCTTCCCATTATTATCTTACATTAATCTTACAAAAACTAGCTGCCACTAAATACCATCTCTCCCTGCAGGAGCATGTGTGTTTGGGCCCTTAGGAAGCGCAGTGAGAGACAGCGACTTGTCACATGTTCTAGTTTAAATTTCTGGTGAGCAAATACTTGCTCTCCAATACCCAACCCCTAAGGAAAAGAGTTTAGAC