CLDN10 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019928
Fusion event
HBV-CLDN10 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr13
Cytoband
q32.1
Reference genome
End
96230327/95578073 (Hg38)
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-1297/Upstream/3087676; hsa-mir-1267/Downstream/849156;
Upstream sequence
AAAAAAACATAATAAGCATTTAGTAAATGTTGACTATCAGTGTTAAATACTGTTTACTCTCCAAATAAGTGAGCTGTAATACTTGTGTAATGCTTTCTCA
Downstream sequence
GATCCCATCAAGGCCCTCCCATAATTAACACTCAAAACTATTTTTAAAATATGCATTTGAAGCATCTGTTGATTGTATGGATGTAAGTGTTCTTACATAG
Target sequence
CAGATACACATACAACGGGGCCACATCTGTCATGTCTTCTCGGACAAAGTATCATGGTGGAGAAGATTTTAAAACAACAAACCCTTCAAAACAGTTTGATAAAAATGCTTATGTCTAAAAGAGCTCGCTGGCAAGCTGCCTCTTGAGTTTGTTATAAAAGCGAACTGTTCACAAAAT
Reference
Tang, K. W., et al.The landscape of viral expression and host gene fusion and adaptation in human cancer. Nat Commun,2013, 4: 2513.
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