FN1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019932
Fusion event
HBV-FN1 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr2
Cytoband
q35
Reference genome
End
216248501/215383778 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-10b/Upstream/1625167; hsa-mir-1244-1/Downstream/2516735;
Upstream sequence
AAATGTTTTTTAAAAGGACAGACAACAAATTTCTTAATTTGTTAGTGACTGAAAGTCTAGGTGATTGTTGAGTAAGGTATCTTTTAGTTTTTGAGACCAG
Downstream sequence
ctatgcctgtcgtattgcagacatgcggaatatatcgacaaaactgactgaacttcctgcccttggggtgcttccttctTTATCTGGCTCAAAACTCTGT
Target sequence
CCTGGACCTGCAGTTTTAGTTTTTGTTGGTCCTGGTCCATTTTTGGGAGTGGTGGTTACTCTGTAACCAGTAACAGGGGAACTTGAAGGCAGCCACTTGACACTAATGCTGTTGTCCTGAACATCGGTCACTTGCATCTGGGATGGTTTGTCAATTTCTACAAATAAAAGCAGGGAGAAACCAGTGAAGCCCCAGTCCTTGGAGACAAGATTGGACAAGTCCTCCTCTCTAGGTCTGGTACATATTCGAATGATC
Reference
Tang, K. W., et al.The landscape of viral expression and host gene fusion and adaptation in human cancer. Nat Commun,2013, 4: 2513.
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