Basic Information
VIS ID
TVIS10019946
Fusion event
HBV-chr9:q34.11 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2013
PubMed ID
24085110
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Host Sequence
Chromosome
chr9
Cytoband
q34.11
Reference genome
GRCh37/hg19
Start
132090684/129328405 (Hg38)
End
132090895/129328616 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-let-7a-1/Upstream/935691; hsa-mir-12126/Downstream/540989;
Nearest TSS
ENST00000422679/Upstream/144; ENST00000427109/Downstream/3684;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/7102, chr9-CpG: 45/Downstream/8228
Nearby gene
C9orf106(-5802) ; LINC01503(+8518) ;
Upstream sequence
ACACAAACACAGCCCATCTTCCTCTCAAGCCTCTTCTGTACCAATACCCCCACTGTACCCTAGACAAGAATCTGGGGTGGCTCTAGCATTATTAGATATT
Downstream sequence
gtgagatggaggctgtgccagctgggaccacattctttgtagtaaggGTGTTACGAATTCTTTTCACCCTCAGTGCCCACGCCTGAGCCTCTGGCTGGAG
Target sequence
GGAGTCCCTCTGAGGAGTGGTCTGTGATGGGACAGGGGCCCTGGAAGGGGAGGGAGGAAGGCAGGTGTGGCCGCCCCTTAGGAGGCAGGCAGAGGGCACCCTGCAACCAGGGTGCATCCAAGCGttccccaaccttaatgtgccttgactcgctgtggggtttcgttcagatgcaggttctgagggagcaggcctggccaggggctcccag
Reference
Tang, K. W., et al.The landscape of viral expression and host gene fusion and adaptation in human cancer. Nat Commun,2013, 4: 2513.
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