ITGAD _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019949
Fusion event
HBV-ITGAD integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2013
PubMed ID
24085110
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
31413434/31402113 (Hg38)
End
31413578/31402257 (Hg38)
Location type
Intronic
Target gene
ITGAD
Nearest miRNA
hsa-mir-1225/Upstream/508128; hsa-mir-11401/Downstream/2761321;
Nearest TSS
ENST00000527434/Upstream/8778; ENST00000567308/Downstream/21685;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/30295, chr16-CpG: 86/Downstream/25313
Upstream sequence
TGACTCATCGTTTGTGTTTGTCAATTTGCAGTTCAGCTTAGCCCTTCCCTGTTCCTGTGTAGTTACAATCTGGCCCTGAAGACATCCGAGGCACTTCAGT
Downstream sequence
CACCTGGGGCTGGGGTTTGGGGGACGGGGGAGGCTGGCCTCGGGGAGGCATCCCGGGAGGGGTGGGGGCAGGCCAGTGAGCCGTGTGTGATGGGGCTGGG
Target sequence
GAGTGTCCACATCAAGAGATGGACATCGTCTTCCTGATTGACGGCTCTGGAAGCATTGACCAAAATGACTTTAACCAGATGAAGGGCTTTGTCCAAGCTGTCATGGGCCAGTTTGAGGGCACTGACACCCTGGTGAAGACTGGG
Reference
Tang, K. W., et al.The landscape of viral expression and host gene fusion and adaptation in human cancer. Nat Commun,2013, 4: 2513.
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