ITGAD _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019950
Fusion event
HBV-ITGAD integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2013
PubMed ID
24085110
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
31418854/31407533 (Hg38)
End
31418991/31407670 (Hg38)
Location type
Intronic
Target gene
ITGAD
Nearest miRNA
hsa-mir-1225/Upstream/513548; hsa-mir-11401/Downstream/2755908;
Nearest TSS
ENST00000527434/Upstream/14198; ENST00000567308/Downstream/16272;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/35715, chr16-CpG: 86/Downstream/19900
Upstream sequence
TGGGGATGCCAAGAACAGCCCCCGGGCTCTGTTGAGCAGGAGCTGCAGGAGGGGGTTGGGCCCCCGCAGTGCATCTCCGATTCCTCCCCATTCCCCCACA
Downstream sequence
GCGCCTCTTCTTCACCCCTGCCCCAGGCTCAGCCTGCATCTCCTTCAGGTGCAGTGCTGCTGGGCTCATCCTCCTCGGCTGTCTCTCTGCTGCAGGTGGG
Target sequence
AAGAATGGGGCCCGAAAAAGTGCCAAGAAGATCCTCATTGTCATCACAGATGGGCAGAAGTACAAAGACCCCCTGGAATACAGTGATGTCATCCCCCAGGCAGAGAAGGCTGGCATCATCCGCTACGCTATCGGGGT
Reference
Tang, K. W., et al.The landscape of viral expression and host gene fusion and adaptation in human cancer. Nat Commun,2013, 4: 2513.
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