VISDB Viral Integration Site DataBase

VIS ID

TVIS10019952

Fusion event

HBV-TEAD1 integration

Validated

No

Detection method

RNA-Seq

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2013

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr11

Cytoband

p15.2

Reference genome

Start

End

12711306/12689759 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-98-5p ; hsa-mir-320a ; hsa-mir-215-3p ; hsa-mir-503-3p ; hsa-mir-548at-5p ; hsa-mir-873-5p ; hsa-mir-101-5p ; hsa-mir-377-3p ; hsa-mir-1324 ; hsa-mir-5004-3p ; hsa-mir-1261 ; hsa-mir-4748 ; hsa-mir-4464 ; hsa-mir-624-3p ; hsa-mir-548e-5p ; hsa-mir-7150 ; hsa-mir-580-3p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-6077 ; hsa-mir-5580-5p ; hsa-mir-219a-1-3p ; hsa-mir-6868-5p ; hsa-mir-9500 ; hsa-mir-4267 ; hsa-mir-4445-3p ; hsa-mir-4722-5p ; hsa-mir-1286 ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-494-3p ; hsa-mir-548p ; hsa-mir-561-3p ; hsa-mir-5187-3p ; hsa-mir-6515-3p ; hsa-mir-1236-3p ; hsa-mir-3140-5p ; hsa-mir-4713-5p ; hsa-mir-3156-3p ; hsa-mir-2116-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-4301 ; hsa-mir-181a-2-3p

Nearest miRNA

hsa-mir-210/Upstream/525890; hsa-let-7a-2/Downstream/3279774;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/14223, chr11-CpG: 198/Downstream/319024

Upstream sequence

gagccatcacacccagcgtaattttaaaatttctataattttataagataatattccaaaaatatatatattCATAGTTATTAATGAAAATTTGTACTTT

Downstream sequence

ccagcagcaatcatcacctcatggctattcttgtaaactcctggctcctctcccaccagattatttggaagcaatcctagttgtcataccgtttcatctg

Target sequence

TCAGGAGCAGAATCTTATTTTTATTTTAGATTTTCAGTGTCTTTGCTTTGGGAAAGTTTAGTACagtagagggcaattgaacccctgtgcacccattatcac