Basic Information
VIS ID
TVIS10019954
Fusion event
HBV-chr4:q13.1 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2013
PubMed ID
24085110
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Host Sequence
Chromosome
chr4
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
63651170/62785452 (Hg38)
End
63651404/62785686 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/1862768; hsa-mir-1243/Downstream/3491138;
Nearest TSS
ENST00000502981/Upstream/619898; ENST00000507857/Downstream/342625;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1582369, chr4-CpG: 60/Downstream/563443
Upstream sequence
ctcccacctcagcttgccacgtaactaggactacaagcatgttccaacacacctgattattattatttttctatagagacagggtctatgttgcccaggc
Downstream sequence
CTGTATCTCATTTGTGCACTTTACAATCCAGTAATAAGGACCTGTTAATATTTCTTATACACATCCTTGGTGTTCAATAACTACATGACTTTTCTTCATG
Target sequence
TGAAATTTACTAGCATATATAGGTATACATACACACATATGCATGTTATACAAACCCACATGCACATACACACAAAACAAATGCCTCATCCcatacatctttcctttttcaaagagccattattaaacatttactagcacacAATCGCCCAGCATTATACTTCAGGGACTCATTATCTCTCACTGGAGCATTGAAATAACCTTTCCTATCCTTTTCCAGTTCTCCACTTTACCA
Reference
Tang, K. W., et al.The landscape of viral expression and host gene fusion and adaptation in human cancer. Nat Commun,2013, 4: 2513.
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