VISDB Viral Integration Site DataBase

VIS ID

TVIS10019958

Fusion event

HBV-MYO1D integration

Validated

No

Detection method

RNA-Seq

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2013

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr17

Cytoband

q11.2

Reference genome

Start

End

31175484/32848466 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-615-3p ; hsa-mir-193b-3p ; hsa-mir-320a ; hsa-mir-92a-3p ; hsa-mir-31-5p ; hsa-mir-218-5p ; hsa-mir-2355-3p ; hsa-mir-676-3p ; hsa-mir-636 ; hsa-mir-1914-5p ; hsa-mir-499b-3p ; hsa-mir-499a-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-106a-5p ; hsa-mir-20a-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-526b-3p ; hsa-mir-520b ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-520c-3p ; hsa-mir-302d-3p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-302e ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520a-3p ; hsa-mir-520f-3p ; hsa-mir-32-5p ; hsa-mir-92b-3p

Nearest miRNA

hsa-mir-1180/Upstream/498079; hsa-mir-10226/Downstream/4185279;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/25413, chr17-CpG: 115/Downstream/27967

Upstream sequence

ttggtaattctcacaatacttcaaacatttcattcttatgacatctgttataagatgtgatcggtaatctttgatgttactattgcaattgttttggggc

Downstream sequence

tcaaagtaaaaCATTACCAAAACATTAATTCTTTACATTTCCTTATGAAAACAAGTAGTTCTGTGGTAGTCAAGTCTCAGAATGATCAAGAAGACTAAAT

Target sequence

ttatgtaggagaccctccttgttcttaggaaattcacatcgaagaattaggggaaaggggcaggatgtctgcaacttactctcaaatattggtaagtgagtgataaggcaaatgtcaaacaattgatgaatctgggtgaaaagtacatgggagttcctgtaacttttctgaaattttaaatcatg