Basic Information
VIS ID
TVIS10019964
Fusion event
HBV-chr19:q13.41 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2013
PubMed ID
24085110
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Host Sequence
Chromosome
chr19
Cytoband
q13.41
Reference genome
GRCh37/hg19
Start
52098586/51595333 (Hg38)
End
52098754/51595501 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA19A
Nearest miRNA
hsa-mir-10395/Upstream/388324; hsa-let-7e/Downstream/97111;
Nearest TSS
ENST00000633603/Upstream/13965; ENST00000601315/Downstream/3788;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/586, chr19-CpG: 20/Downstream/3047
Nearby gene
LINC01530(-953) ; LOC339352(+3177) ;
Upstream sequence
AAGCAGGGAAGTGAGGTAGAAGCCTGGTGGCTTTGTGGCTCCATCCCCTCCTCCCTGCCTGCTGCAATAGATACATCATCGGCGTCCGAGACTGAGAGTG
Downstream sequence
ctgccaacctctaagcttctggtcctttctggtcgtcctcagtcacaacacactttccaatgggctgaacacagccaggccctgcccttcatgtcctttg
Target sequence
tcctcactgttctgtttcttcccttgccacactccaccctctattcaggcacagtgccaggaagcctgtggaaatataaatcagatcctgtcaccagtcactaccctgccccccagcttaaaatcatccagtggttcccatctcagaataaaatccaagctccttatc
Reference
Tang, K. W., et al.The landscape of viral expression and host gene fusion and adaptation in human cancer. Nat Commun,2013, 4: 2513.
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