VISDB Viral Integration Site DataBase

VIS ID

TVIS10019973

Fusion event

HBV-FN1 integration

Validated

No

Detection method

RNA-Seq

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2013

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr2

Cytoband

q34

Reference genome

Start

End

216248908/215384185 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-200c-3p ; hsa-mir-200b-3p ; hsa-mir-1-3p ; hsa-let-7g-5p ; hsa-mir-26b-5p ; hsa-mir-615-3p ; hsa-mir-218-5p ; hsa-mir-140-3p

Nearest miRNA

hsa-mir-10b/Upstream/1625876; hsa-mir-1244-1/Downstream/2516328;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/71626, chr2-CpG: 43/Downstream/51359

Upstream sequence

AATCTATTCTACAATTAGAAAAATACCTTGGGAGAACATTGCAAAACAGTATCTGAATAAGTAAAAGCTGGTGTCACCCCAGAGTAGAAGTTTGTACCTG

Downstream sequence

TGTATGAAAAAGGGTTAGTTCAGAGTGTGAGGGGTTTAGAGCTACTTGGGTATTACTGATTAATTGAATTACCACATTTATAGCAGCATGTAAATCACAT

Target sequence

GGAAATTGGCTTGCTGCTTGCGGGGCTGTCTCCACGGCCAGTGACAGCATACACAGTGATGGTATAATCAACTCCAGGTTTAAGGCCGCTGATGGTAGCTGTAGACTTGCTCCCAGGCACAGTGAACTCCTGGACAGGGCTATTTCCTCC