SUMF1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019975
Fusion event
HBV-SUMF1 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2013
PubMed ID
24085110
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Host Sequence
Chromosome
chr3
Cytoband
p26.2
Reference genome
GRCh37/hg19
Start
3747245/3705561 (Hg38)
End
3747406/3705722 (Hg38)
Location type
Intronic
Target gene
SUMF1
miRNAs that regulate target gene
hsa-mir-148b-3p ; hsa-mir-106b-5p ; hsa-mir-128-3p
Nearest miRNA
hsa-let-7g/Downstream/1544455;
Nearest TSS
ENST00000440867/Upstream/78265; ENST00000472075/Downstream/92492;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/525628, chr3-CpG: 190/Downstream/93107
Upstream sequence
ccacctttagatacctaattttaccattctgactaacccattatataaactcacacacacacaaaaagcctagctgaccccataaatcctaaatcctttc
Downstream sequence
TCCAAGCTCTTGGTATCTATTCTTTAACTTGaataataaaaaataaattttttaaataataaCTTTCCATGTTTTAGAGGAACCGGCAGAGAAATAGTAA
Target sequence
CTGGAATTCACTTATTGACAATAAGAACCATGCTCAAAGTAATGCTGACAAAGGGATCTTTTCCACAAAGGAAACCTGAGGCTTTTCTGCATTCAGGCCTTTACTCTGAATCTACGGATGCATTGATATTGGTATCATTACTATCATCATTATTTCCTTCA
Reference
Tang, K. W., et al.The landscape of viral expression and host gene fusion and adaptation in human cancer. Nat Commun,2013, 4: 2513.
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