VISDB Viral Integration Site DataBase

VIS ID

TVIS10019978

Fusion event

HBV-SCN3B integration

Validated

No

Detection method

RNA-Seq

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2013

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr11

Cytoband

q24.1

Reference genome

Start

End

123522043/123651335 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-6499-3p ; hsa-mir-2467-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-1827 ; hsa-mir-4537 ; hsa-mir-4257 ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-1228-3p ; hsa-mir-1273e

Nearest miRNA

hsa-let-7a-2/Upstream/269662; hsa-mir-3167/Downstream/3337123;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/73500, chr11-CpG: 96/Downstream/2690

Upstream sequence

agtgattctcctgcctcagcctcctgagtagctgggattataggcacctgccaccacacccagctaattttttgtatttttagtaaagacggggattctc

Downstream sequence

ATGAAATTGTATCTGTGAAGGGCGGCTGtttttctttcttttttttttgatggagtctcgccctgttgcccacgctggagtgcagtggcacaatcttggc

Target sequence

TTTAACAAAGGAAATAAGGAAACTTTTTTTCATGCATGCAGAAAGTAAATGGAAAGACTCTTTCCCTTCATATTGTACATCATATTAAAAAATCAACTTTGGAAGGGGGAACACATCTAACCCAGCATTATTGTTCAATATTGGAATTGCATGCAAATCAA