VISDB Viral Integration Site DataBase

VIS ID

TVIS10019979

Fusion event

HBV-NCOR2 integration

Validated

No

Detection method

RNA-Seq

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2013

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr12

Cytoband

q24.31

Reference genome

Start

End

124913290/124428744 (Hg38)

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-10a-5p ; hsa-mir-10b-5p ; hsa-mir-16-5p ; hsa-mir-9-5p ; hsa-mir-2110 ; hsa-mir-130b-5p ; hsa-mir-20a-5p ; hsa-mir-125b-5p ; hsa-mir-100-5p ; hsa-mir-30c-5p ; hsa-mir-4459 ; hsa-mir-6757-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-3178 ; hsa-mir-6799-5p ; hsa-mir-6785-5p ; hsa-mir-6883-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-25-5p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-658 ; hsa-mir-2277-5p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-6087 ; hsa-mir-6871-5p ; hsa-mir-4756-5p ; hsa-mir-1321 ; hsa-mir-4739 ; hsa-mir-195-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-34a-3p ; hsa-mir-1266-5p ; hsa-mir-3197 ; hsa-mir-3612 ; hsa-mir-3937 ; hsa-mir-4274 ; hsa-mir-4313 ; hsa-mir-4443 ; hsa-mir-4518 ; hsa-mir-4530 ; hsa-mir-4802-5p ; hsa-mir-510-5p ; hsa-mir-6085 ; hsa-mir-650 ; hsa-mir-6798-5p ; hsa-mir-6807-5p ; hsa-mir-6813-5p ; hsa-mir-6858-3p ; hsa-mir-7108-3p

Nearest miRNA

hsa-let-7i/Upstream/91200; hsa-mir-3612/Downstream/486803;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/1524, chr12-CpG: 28/Downstream/16582

Upstream sequence

TAAATAAAACAATACAAAACTTTATGAAATAAGATACAATATAAATCGTATACATGCTTAGGAAAGCAAGAAAATAAATAGGTTATAAAGAATATTTTCT

Downstream sequence

attttgatttcaatagccatgcgtggctCTGCTGTGCTGAGCTAAAGGGCTATAATCTCCCATCTGGACAAAAGCTCTCCCTGGACAAAAGTCCCCAGAA

Target sequence

gctgggtaaaaatgcggattcctgggctctgccccagaccagctgaatcagagtctctggTGAGAAACTGCTACTTAAACCAGCCGCCCCCTCCCTGGGGCCCCTTCCATCTGTCTAATCTGAGCATCAGCATCGCAGGGCAGCGCGTTCTgttgtccaacagagcactctgcagccagggaggtgttcgctgtctgctccgcccaggaggggagctgccaaccacaagcggctgtcgagctcttgagatgtgtc