PAPPA2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019980
Fusion event
HBV-PAPPA2 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2013
PubMed ID
24085110
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Host Sequence
Chromosome
chr1
Cytoband
q25.2
Reference genome
GRCh37/hg19
Start
176694014/176724878 (Hg38)
End
176694394/176725258 (Hg38)
Location type
Intronic
Target gene
PAPPA2
Nearest miRNA
hsa-mir-101-1/Upstream/756399; hsa-mir-1182/Downstream/304105;
Nearest TSS
ENST00000473358/Upstream/171390; ENST00000479836/Downstream/66187;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/517203, chr1-CpG: 44/Downstream/438998
Upstream sequence
GGACCAAGAGCACCAGATCTCCCAGAATTTATCACAAGTGcttgggcaggtcatctccaagcctcagtttttccccatctgagcaaggggaaaaaggatg
Downstream sequence
ctcacaggctgtacaaaaacaggcagtgggtcagatttggcttgtggacaatagtgtgcTAATATCTATTCTATATCATGTTTCCAGTAAATATTAAAGA
Target sequence
tctaaaaatgattatcttaaaattcagagatgttaagcactggctagtagagctacagataggattaaaattgaaatccagtttatggaaaaactcatggtcctttctctctacACcagggttttggaaacattttctataaagaaagcagattaaaaaactactttagggtttatgggccattcagtctgtgtcacaactacttaactactacttccgttagcatgaacatagccatagtcaatatgtaaatga
Reference
Tang, K. W., et al.The landscape of viral expression and host gene fusion and adaptation in human cancer. Nat Commun,2013, 4: 2513.
Curate