Basic Information
VIS ID
TVIS10019984
Fusion event
HBV-chr19:p13.3 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2013
PubMed ID
24085110
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
6671020/6671009 (Hg38)
End
6671370/6671359 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA19B
Nearest miRNA
hsa-mir-1227/Upstream/254498; hsa-let-7e/Downstream/65353;
Nearest TSS
ENST00000633603/Upstream/421; ENST00000596543/Downstream/6971;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/10926, chr19-CpG: 39/Downstream/35742
Nearby gene
TNFSF14(-414) ; C3(+6826) ;
Upstream sequence
GCGAGAGCCAGGTTGTGGGAAAGCAGGGAAGTGAGGTAGAAGCCTGGTGGCTTTGTGGCTCCATCCCCTCCTCCCTGCCTGCTGCAATAGATACATCATC
Downstream sequence
gacggagtctcgctctgtcgcccaggctggagtgcagtggtgcgatctcggctcactgcaagctccgcctcccaggttcacgccattctcctgcctcagc
Target sequence
gtgtatcatgtacacatgtgcaggcgcatgcctgtgtatcatacatgtgctggcatgtaaatgtgcgtgcatatgtgggcaggtgcatgcatatgtgtatggtcatctgtgtgcatgtgcatgtggtccatgtacatgcatgcatgtgcacgtgtgtgtatgtgtGAACATGCATCACATGTGCAAgtgggtgtgcatatatgtgctgtgtgcaggtgtgtgcatgtgtgtgtgcctgtgcattggtgcgtgtat
Reference
Tang, K. W., et al.The landscape of viral expression and host gene fusion and adaptation in human cancer. Nat Commun,2013, 4: 2513.
Curate