Basic Information
VIS ID
TVIS10019987
Fusion event
HBV-chr5:p15.32 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2013
PubMed ID
24085110
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Host Sequence
Chromosome
chr5
Cytoband
p15.32
Reference genome
GRCh37/hg19
Start
5093353/5093240 (Hg38)
End
5093681/5093568 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-4277/Upstream/3384372; hsa-mir-10397/Downstream/1734285;
Nearest TSS
ENST00000502646/Upstream/14929; ENST00000511368/Downstream/46486;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/226723, chr5-CpG: 148/Downstream/45760
Upstream sequence
taatgggtgcagcacaccaacatggcacatgtatacatatgtaactaacctgcacgtcgtgcacatgtaccctagaacttaaagtattaaaaaaaaaaaa
Downstream sequence
ctcaatgtagctgtaaaattcacacagtgactcctcctatgcacttaataaggctgacatcatgaatgggaaagccccttgtaagctgttcacagttaca
Target sequence
TTTGATCTACTTGTGGGCAAATCTGAGTTTCAAAGATTATGCTTTAAATCTTCTCTCCTACTATAACTTCCATTGGCAAACTGTGCTTGGCCACTCTCCTTAAAACGAAAAATTCTTAAAGTAGAGGTAAGTAGCTTTTATGTATGTGACCAGTTACAAAACCGTTCCAGTTTTTATCCCTTCTAACTGAGAATTATGTACTGACTCTATCTACTTGAGTGGCAAATTtggagatgaggaaaggaagtggtactc
Reference
Tang, K. W., et al.The landscape of viral expression and host gene fusion and adaptation in human cancer. Nat Commun,2013, 4: 2513.
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