Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019990
Fusion event
HBV-THOC1 integration
Validated
Yes
Detection method
Alu PCR
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2001
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1711
End
1810
Integrated sequence
AGACTGTGTGTTTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAATGATCTTTGTATTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCA
Host Sequence
Chromosome
chr18
Cytoband
p11.3
Reference genome
Start
End
222742
Location type
Intonic
Target gene
miRNAs that regulate target gene
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Reference
Gozuacik, D., et al. Identification of human cancer-related genes by naturally occurring Hepatitis B Virus DNA tagging. Oncogene,2001, 20(43): 6233-6240.