Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019997
Fusion event
HBV-ATP2A1 integration
Validated
Yes
Detection method
Alu PCR
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Weak
Reported year
2001
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1720
End
1819
Integrated sequence
GTTTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAATGATCTTTGTATTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAAC
Host Sequence
Chromosome
chr16
Cytoband
p12.1
Reference genome
Start
End
2293
Location type
exon3
Target gene
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Reference
Gozuacik, D., et al. Identification of human cancer-related genes by naturally occurring Hepatitis B Virus DNA tagging. Oncogene,2001, 20(43): 6233-6240.