Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10020006
Fusion event
HBV-THRAP3 integration
Validated
Yes
Detection method
Alu PCR
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2001
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1796
End
1796
Integrated sequence
G
Host Sequence
Chromosome
chr1
Cytoband
p32.3
Reference genome
Start
End
103541
Location type
Intonic
Target gene
miRNAs that regulate target gene
hsa-mir-877-3p ; hsa-mir-877-5p ; hsa-mir-615-3p ; hsa-mir-326 ; hsa-mir-125a-5p ; hsa-mir-125b-5p ; hsa-mir-559 ; hsa-mir-548b-5p ; hsa-mir-548a-5p ; hsa-mir-548c-5p ; hsa-mir-548d-5p ; hsa-mir-548j-5p ; hsa-mir-548h-5p ; hsa-mir-548i ; hsa-mir-3153 ; hsa-mir-548w ; hsa-mir-548y ; hsa-mir-548o-5p ; hsa-mir-548ab ; hsa-mir-548ad-5p ; hsa-mir-548ae-5p ; hsa-mir-548ak ; hsa-mir-548am-5p ; hsa-mir-3973 ; hsa-mir-548ap-5p ; hsa-mir-548aq-5p ; hsa-mir-548ar-5p ; hsa-mir-548as-5p ; hsa-mir-548au-5p ; hsa-mir-548ay-5p ; hsa-mir-6733-5p ; hsa-mir-6739-5p ; hsa-mir-6783-5p ; hsa-mir-548bb-5p ; hsa-mir-203a-3p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-548p ; hsa-mir-5680 ; hsa-mir-625-3p ; hsa-mir-3936
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Reference
Gozuacik, D., et al. Identification of human cancer-related genes by naturally occurring Hepatitis B Virus DNA tagging. Oncogene,2001, 20(43): 6233-6240.