VISDB Viral Integration Site DataBase

VIS ID

TVIS10020008

Fusion event

HBV-MCM8 integration

Validated

Yes

Detection method

Alu PCR

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Weak

Reported year

2001

PubMed ID

Virus name

HBV

Reference genome

Start

1691

End

1790

Integrated sequence

GACCTTGAGGCCTACTTCAAAGACTGTGTGTTTAAGGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAATGATCTTTGTATTAGGAGGCTGTAGGCATA

Chromosome

chr20

Cytoband

p12.3

Reference genome

Start

End

52079

Location type

Intonic

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-155-5p ; hsa-mir-99a-5p ; hsa-mir-374a-5p ; hsa-mir-1273e ; hsa-mir-6807-5p ; hsa-mir-4266 ; hsa-mir-6894-5p ; hsa-mir-4683 ; hsa-mir-1233-3p ; hsa-mir-1225-3p ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-4768-3p ; hsa-mir-4779 ; hsa-mir-6888-5p ; hsa-mir-4695-5p ; hsa-mir-574-5p ; hsa-mir-943 ; hsa-mir-3136-5p ; hsa-mir-4439 ; hsa-mir-6867-5p ; hsa-mir-892a ; hsa-mir-4460 ; hsa-mir-4727-3p ; hsa-mir-6791-3p ; hsa-mir-6829-3p ; hsa-mir-3653-5p ; hsa-mir-3677-5p ; hsa-mir-6888-3p ; hsa-mir-4711-3p ; hsa-mir-3120-5p ; hsa-mir-4279 ; hsa-mir-1976 ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-8062 ; hsa-mir-5698 ; hsa-mir-744-3p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-143-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6499-3p ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-6513-3p ; hsa-mir-4532 ; hsa-mir-1247-3p ; hsa-mir-544a ; hsa-mir-4277 ; hsa-mir-20a-3p ; hsa-mir-584-3p ; hsa-mir-4762-5p ; hsa-mir-1285-5p ; hsa-mir-6874-3p ; hsa-mir-148b-5p ; hsa-mir-216a-5p ; hsa-mir-122-5p ; hsa-mir-1304-3p ; hsa-mir-3664-5p ; hsa-mir-4639-3p ; hsa-mir-6794-3p ; hsa-mir-144-3p ; hsa-mir-16-1-3p ; hsa-mir-3606-3p ; hsa-mir-3653-3p ; hsa-mir-3658 ; hsa-mir-513a-3p ; hsa-mir-513c-3p ; hsa-mir-5680 ; hsa-mir-7856-5p

Nearest CpG islands

None/Target, None/Upstream, None/Downstream