hsa-mir-422a _LIHC.png
TERT _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10020010
Fusion event
HBV-TERT integration
Validated
Yes
Detection method
RT-PCR+Long-range PCR
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2003
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Start
1451
End
1805
Integrated sequence
GGACGACCCGTCTCGGGGCCGTTTGGGCCTCTACCGTCCCCTTCTTCTTCTGCCGTTCCAGCCGACCACGGGGCGCACCTCTCTTTACGCGGTCTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAGGTCTTGCCCAAGGTCTTATATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATAC
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
Start
End
37137
Location type
Intonic
Target gene
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Nearest cancer related gene
TERT(OG, No orient, 0)
Reference
Ferber, M. J., et al. Integrations of the hepatitis B virus (HBV) and human papillomavirus (HPV) into the human telomerase reverse transcriptase (hTERT) gene in liver and cervical cancers. Oncogene ,2003,22(24): 3813-3820.
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