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TVIS10020010
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10020010
Fusion event
HBV-TERT integration
Validated
Yes
Detection method
RT-PCR+Long-range PCR
Data source
Curated
Sample type
Cell line
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2003
PubMed ID
12802289
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
AF330110
Start
1451
End
1805
Integrated sequence
GGACGACCCGTCTCGGGGCCGTTTGGGCCTCTACCGTCCCCTTCTTCTTCTGCCGTTCCAGCCGACCACGGGGCGCACCTCTCTTTACGCGGTCTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAGGTCTTGCCCAAGGTCTTATATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATAC
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
AY007685
Start
37133
End
37137
Location type
Intonic
Target gene
TERT
miRNAs that regulate target gene
hsa-mir-138-5p
;
hsa-mir-498
;
hsa-mir-193b-3p
;
hsa-mir-335-5p
;
hsa-mir-512-5p
;
hsa-mir-1207-5p
;
hsa-mir-1266-5p
;
hsa-mir-1182
;
hsa-mir-181a-5p
;
hsa-mir-6776-3p
;
hsa-mir-197-3p
;
hsa-mir-6740-3p
;
hsa-mir-6760-3p
;
hsa-mir-532-5p
;
hsa-mir-3064-5p
;
hsa-mir-422a
;
hsa-mir-346
;
hsa-mir-1226-3p
;
hsa-mir-1255a
;
hsa-mir-1255b-5p
;
hsa-mir-143-3p
;
hsa-mir-3161
;
hsa-mir-3605-5p
;
hsa-mir-3620-3p
;
hsa-mir-3682-3p
;
hsa-mir-4323
;
hsa-mir-4712-3p
;
hsa-mir-4733-3p
;
hsa-mir-4758-3p
;
hsa-mir-4770
;
hsa-mir-6088
;
hsa-mir-7112-3p
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Nearest cancer related gene
TERT
(OG, No orient, 0)
Reference
Ferber, M. J., et al. Integrations of the hepatitis B virus (HBV) and human papillomavirus (HPV) into the human telomerase reverse transcriptase (hTERT) gene in liver and cervical cancers. Oncogene ,2003,22(24): 3813-3820.
Sample Information
×
Sample name
SNU449
Sample type
Cell line
Gender
Female
CpG Island Information
×
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