Basic Information
VIS ID
TVIS10020106
Fusion event
HBV-chr18:q23 integration
Validated
Yes
Detection method
Alu PCR
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2013
PubMed ID
22989571
Virus Sequence
Virus name
HBV
Reference genome
U95551.1
Region type
HBx
Start
1594
End
1978
Integrated sequence
ACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCGAATGTTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCTGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTT
Host Sequence
Chromosome
chr18
Cytoband
q23
Reference genome
Not given
Start
80153489
End
(Hg38)
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Nearby gene
PARD6G(+3743) ;
Reference
Pollicino, T., et al.Hepatitis B virus DNA integration in tumour tissue of a non-cirrhotic HFE-haemochromatosis patient with hepatocellular carcinoma. J Hepatol,2013, 58(1): 190-193.
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