Basic Information
VIS ID
TVIS10020123
Fusion event
HBV-LOC110806263 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
951
End
2047
Orient
+
Integrated sequence
AAATTGCCTGTAAATAGACCTATTGATTGGAAAGTATGTCAAAGAATTGTGGGTCTTTTGGGCTTTGCTGCCCCTTTTACACAATGTGGCTATCCTGCCTTGATGCCTTTATATGCATGTATACAATCTAAGCAGGCTTTCACTTTCTCGCCAACTTACAAGGCCTTTCTGTGTAAACAATATCTAAACCTTTACCCCGTTGCCCGGCAACGGTCAGGTCTCTGCCAAGTGTTTGCTGACGCAACCCCCACGGGT
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
1295396/1295281 (Hg38)
End
1296444/1296329 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC110806263
Nearest miRNA
hsa-mir-4635/Upstream/232307; hsa-mir-10397/Downstream/12981;
Nearest TSS
ENST00000502646/Upstream/212; ENST00000605200/Downstream/25500;
Nearest CpG islands
chr5-CpG: 485/Target, None/Upstream, None/Downstream
Upstream sequence
CACAGTCACCACACATCAGACCCCTGTGACCGATCACCATCCACAGTCACCACACATCAGACCCCACAACCGCCATCCACAGTCACCACACATCAGACCC
Downstream sequence
TCGCTGGAGGTTAGCCTCGTCTTGTAAATACTTAGGATTACAGGTCGCTCTTCTAGAAATCCCCTTAGTGATCCCTAAGCCTTTTTAAAGGGCTGTGTTT
Target sequence
CTGGCCCCGACAGCGCAGCTGCTCCGGGCGGACCCGGGGGTCTGGGCCGCGCTTCCCCGCCCGCGCGCCGCTCGCGCTCCCAGGGTGCAGGGACGCCAGCGAGGGCCCCAGCGGAGAGAGGTCGAATCGGCCTAGGCTGTGGGGTAACCCGAGGGAGGGGCCATGATGTGGAGGCCCTGGGAACAGGTGCGTGCGGCGACCCTTTGGCCGCTGGCCTGATCCGGAGACCCAGGGCTGCCTCCAGGTCCGGACGCG
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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