KCTD8 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10020143
Fusion event
HBV-KCTD8 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1147
End
2247
Orient
+
Integrated sequence
CCGTTGCCCGGCAACGGTCAGGTCTCTGCCAAGTGTTTGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGA
Host Sequence
Chromosome
chr4
Cytoband
p13
Reference genome
GRCh37/hg19
Start
44210059/44208042 (Hg38)
End
44211109/44209092 (Hg38)
Orient
+
Location type
Intronic
Target gene
KCTD8
Nearest miRNA
hsa-mir-12113/Upstream/3705923; hsa-mir-1243/Downstream/3443577;
Nearest TSS
ENST00000502981/Upstream/190980; ENST00000513775/Downstream/238521;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1550509, chr4-CpG: 174/Downstream/238277
Upstream sequence
atgcagagccctcagcacagagtctgCCCAGAGCCCCTGGCTGAGACTGTGTAGGGAATTGGGGGCATTTATGCAAAATGACCACTGAGATGCCACCCAA
Downstream sequence
GATCTGGAATCTTGGATTTTTACCCCCTCACAAGCAGTAATATTTAATGATCTGTTAAAATGGGGTTTTCTGAAGGGATTTTTATTATGCACAAACAGCA
Target sequence
GAAATTCCAGGAGATTGTGATAGGCTAAGAAACCCTATGTCCACCACAGTTTTCCTCTTTGGGTACAAAAGGTGACCACAGCCTTTAAGAAGGGGTTCAAATTAACTTTCTTAGAAATTTTCTCAAATTCCCCAGCAATTATCTACTATTCTTTTCCATTGTTGTAATACAGTAATTGCAATGTGTTTAACGAAAGGCACCATTAGTAATTATTTTTAAAACAGTTTTACTGAGTCAATACCAATTGGTGTCACA
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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