Basic Information
VIS ID
TVIS10020151
Fusion event
HBV-LINC01317 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1090
End
2190
Orient
+
Integrated sequence
TCACTTTCTCGCCAACTTACAAGGCCTTTCTGTGTAAACAATATCTAAACCTTTACCCCGTTGCCCGGCAACGGTCAGGTCTCTGCCAAGTGTTTGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTG
Host Sequence
Chromosome
chr2
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
34323321/34098254 (Hg38)
End
34324371/34099304 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC01317
Nearest miRNA
hsa-mir-1301/Upstream/679690; hsa-mir-10b/Downstream/1372101;
Nearest TSS
ENST00000437798/Upstream/31028; ENST00000422558/Downstream/284484;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/370637, chr2-CpG: 191/Downstream/2255950
Upstream sequence
AGGCAGAGAAGGAATTTCTTGAGAGGcagtgttgcctagtggttaagagttggctgcctgggtttgaatttggtctctgtttaacttctcttcttcagtt
Downstream sequence
AAaataacagtttccatttatgaagcacttactgtggcagccgctcctccaagtgctctgcctacattgacatattttatcctcactacaatcttatgta
Target sequence
ctacacatgctttaaagtgaattaagtgccatggtagagaataatagagcaggaatgacatggtaggtgaaggaacccactttagacacagtggtcagaaaagatttttccaagcagttgactcttatgctaagacctcagggtgagattgagccagctacaggaagtggaaaaagcatcccacggagagggaactgcatgcatgaagacccacaggcaggagaggcctcggaggtaaaaggaactgaagatgtc
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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