Basic Information
VIS ID
TVIS10020163
Fusion event
HBV-chr14 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1163
End
2259
Orient
+
Integrated sequence
GTCAGGTCTCTGCCAAGTGTTTGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTC
Host Sequence
Chromosome
chr14
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
83180405/82714061 (Hg38)
End
83181453/82715109 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-1260a/Upstream/5447771; hsa-mir-1185-1/Downstream/11233117;
Nearest TSS
ENST00000550708/Upstream/71425; ENST00000554753/Downstream/81112;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/1179971, chr14-CpG: 45/Downstream/2815041
Nearby gene
LINC02301(-7236) ;
Upstream sequence
AGACCGTGCAGTATTGAAAGTATTTGTTAATTATCTGCTTAGTATTAACACTAAATTTGTAGAATGACTTTCAGGTTTGTTGAACAATGCCTtttcaggt
Downstream sequence
AATTAATGAACATTTAGTTGAGTCCTTTCCTCTTTTCTGGAAAATAGTGATGGGATTTGGTGCCCTTTGGGAGGCTGGCACATGGTAGATATGAATGTAT
Target sequence
aaGATGAACAAGAGCTGATTTAGATTACTTCTTCAGAAAAGCTTTCAGACTCTGCTGTAAGTCATCACAGTTAATGACCAAACAGCTCATTTATTTCCATTTTTTTGAGTTACATTATCTATTTTTGCAAAAACATGTGAACTATTCTGGAGCAGAGAAGTTTGCTCTATGGTAAGAGGCTAGAGAATTTCCTCAGCTACTCAGGACTTACTTTAATTTTACATTAGGCAATGAAAGTCAAGAAGATTGTTCCAG
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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