Basic Information
VIS ID
TVIS10020166
Fusion event
HBV-chr1 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1163
End
2259
Orient
+
Integrated sequence
GTCAGGTCTCTGCCAAGTGTTTGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTC
Host Sequence
Chromosome
chr1
Cytoband
q41
Reference genome
GRCh37/hg19
Start
214957726/214784383 (Hg38)
End
214958774/214785431 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-101-1/Upstream/2706698; hsa-mir-1182/Downstream/5332422;
Nearest TSS
ENST00000473358/Upstream/129235; ENST00000478774/Downstream/220344;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/175170, chr1-CpG: 23/Downstream/85003
Upstream sequence
AAGGAAAAGAAGAACTGTCCTGAGAATTCCTACACTCAGATTTGTGAACACTCAAATTTCTATCCTCAGATTTTCATACTCATTAAttttgggccaaaat
Downstream sequence
aagccttatgattctactgtcagagatcctatctatagcaacagttgggatgcaaatggtcaggatctagtgctaactgacttacagttccaaagaaggg
Target sequence
aatgggagaaaatttttgcactctgcccatgcgacaaaggacaaatatccagaatctacaaagaacttaaacagatttacaagaaaaatacaaccctatcaaaaagtgggcaaaggatataaacagacacttctcaaaagaagacatttatgcagccaacagacacatgaaaaaatgctcatcatcactggtcatcagagaaatgcaaatcaagtccacaatgagataccatgtcatgccagttagaatggcgat
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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