Basic Information
VIS ID
TVIS10020181
Fusion event
HBV-chr10 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
822
End
1922
Orient
+
Integrated sequence
GGTATACATTTGAACCCTAATAAAACCAAACGTTGGGGCTACTCCCTTAACTTCATGGGATATGTAATTGGAAGTTGGGGTACTTTACCGCAGGAACATATTGTACAAAAACTCAAGCAATGTTTTCGAAAATTGCCTGTAAATAGACCTATTGATTGGAAAGTATGTCAAAGAATTGTGGGTCTTTTGGGCTTTGCTGCCCCTTTTACACAATGTGGCTATCCTGCCTTGATGCCTTTATATGCATGTATACAA
Host Sequence
Chromosome
chr10
Cytoband
q26.2
Reference genome
End
129392031/127593767 (Hg38)
Orient
+
Fragile sites / regions
Nearest miRNA
hsa-mir-107/Upstream/1772895; hsa-mir-202/Downstream/2249532;
Upstream sequence
ctgtaatcccagctctttgggaggctgaggagggcggaacaaaatgtcaggagttggagaccagcctgcccaatatggtgaaaccccgtctctactgaaa
Downstream sequence
GAGATTTACAGCTCTGAACCTTCAGTAGAAATTTGTGGAGCAAACTCTAACCAAACTTTGCAATATCAAATTTTTACAATGTTAGTATAAATAAAAAGAA
Target sequence
GGTTAAGTCTGGAAGCAATCACTGTctgttgctgctgctgctcctgctgctgACAGGTCTAGAGGAGGTAGGTGTCTAATCATTGTGAAGTGGAGACAGCCCTTCCCCGTGCGACACCAGGAAAGAGTCTAAATTGCCCTGTTCTCCACAAGCCATTTTCATTAGATAGATGTCTAATTCTCCTAGTGGGCACGTGGCCCTGGCGGTCTTATAAAGCCCAGGGTGTGCAGACAGAGTTCCCCCAGTGAGACTCTA
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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