ITGAD _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10020183
Fusion event
HBV-ITGAD integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1440
End
2540
Orient
+
Integrated sequence
CTGAATCCCGCGGACGACCCGTCTCGGGGCCGTTTGGGCCTCTACCGTCCCCTTCTTCATCTGCCGTTCCGGCCGACCACGGGGCGCACCTCTCTTTACGCGGTCTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTAGCATGGAGACCACCGTGAACGCCCACCAGGTCTTGCCCAAGGTCTTACACAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACC
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
31412929/31401608 (Hg38)
End
31413979/31402658 (Hg38)
Orient
+
Location type
Intronic
Target gene
ITGAD
Nearest miRNA
hsa-mir-1225/Upstream/507623; hsa-mir-11401/Downstream/2760920;
Nearest TSS
ENST00000527434/Upstream/8273; ENST00000567308/Downstream/21284;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/29790, chr16-CpG: 86/Downstream/24912
Upstream sequence
TGCTGGGCTCTGCCCTGGTGAGTGTCCTCACCAAGGAGTATGAGGACGCCGTCAGCATCGCCACGGTGAGTTCCCTGACAGCGCTCGGCTCCCGGGCGGG
Downstream sequence
ggggtgcaatcatagctcactgcagacttgatctcccaggctcaagtgatcctctttcctcagcctcctgagtagatgggactacaggtgcatgccacca
Target sequence
GGCCAGGACTTGTCTCCAGCACCCATGTGCGTGTTGCtttatccttgcagtgatcccacgtggtagccactgatattaccttcattttacagatagggacactgaagtccagagaagttaagtaatgtgcctgaattcaccaattagcacgtggctgagctggggtttagcccaggcacactggctccagaacacgcgccctgaaccactttgctaaacATTCGCCCTTGATGCTTGTGGCACCCCTAGCATCTG
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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