Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10020184
Fusion event
HBV-ITGAD integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1440
End
2540
Orient
+
Integrated sequence
CTGAATCCCGCGGACGACCCGTCTCGGGGCCGTTTGGGCCTCTACCGTCCCCTTCTTCATCTGCCGTTCCGGCCGACCACGGGGCGCACCTCTCTTTACGCGGTCTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTAGCATGGAGACCACCGTGAACGCCCACCAGGTCTTGCCCAAGGTCTTACACAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACC
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
Start
End
31415367/31404046 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-1225/Upstream/509011; hsa-mir-11401/Downstream/2759532;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/31178, chr16-CpG: 86/Downstream/23524
Upstream sequence
CCCTGCCCCACCCCCACAGCATCCCTACAGGCATATCCTACAGGCCTCGAAGGTGCCTGGCACGTGGTGAGAATGGTGCCAGCGGCTGACCCTGGCAGAG
Downstream sequence
AGCTTAGGATTGAGATCATGTGTGTGGGGTGCTCAGCCCGGGGCACGTAGGAGGTGTCGGATAAATGCCTGAGGTTTTATCAGAGAATGGAGTAGTCAGG
Target sequence
aaagttatttttaataaactgtgaaggaaatatcatttggtttagattttccagtttatattttgtatttttgggccaatgaattttcttctctgggtttcagtatattatttgtagggcttcaaaaCACATGGGAAATGGTTTGTAAATCCAAAATAATTCCAAAATAAAGTTTATTAAAACTGAAAACAATATggcttggtgtggtggctcacacctgtaatcccagcactttgggaggctgaggtgggagta
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.